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lims-guide-metadata [2023/04/07 16:36] csdunhamlims-guide-metadata [2023/05/04 17:42] (current) – Added parent_ID to the representative JSON file. csdunham
Line 13: Line 13:
 <file javascript metadata.json> <file javascript metadata.json>
 { {
 +    // acquired_by is the LIMS username of the user
     "acquired_by": "bpm_admin",     "acquired_by": "bpm_admin",
     "components": [     "components": [
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             "isoleucine"              "isoleucine" 
         ],          ], 
 +        // Component ratios come in the form of a string,
 +        // where each component is separated by a colon.
         "ratios":         "ratios":
             "50:50"              "50:50" 
         ],          ], 
 +        // Ratio types can be MassRatio or MoleRatio.
         "ratio_types":         "ratio_types":
             "MoleRatio"              "MoleRatio" 
Line 39: Line 43:
             "(C11H24N2O4)n"              "(C11H24N2O4)n" 
         ],          ], 
 +        // All molecular weights are expressed as g/mol.
         "molec_weights":         "molec_weights":
             250.0              250.0 
         ],          ], 
 +        // Tg: glass-phase transition temperature, in C
         "tgs": [],          "tgs": [], 
 +        // PDI: polydispersity index
         "pdis": [],          "pdis": [], 
 +        // SMILES string, preferably isomeric SMILES
         "SMILES": [],          "SMILES": [], 
 +        // bigSMILES string, refer to bigSMILES publications @ MIT.
         "bigSMILES": []          "bigSMILES": [] 
     },      }, 
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         "pdi": []          "pdi": [] 
     },      }, 
-    "synthesis_ID":+    // Note: synthesis ID and experimental ID are used  
 +    // interchangeably in conversation. However, the 
 +    // system expects a parameter named synthesis_ID. 
 +    "synthesis_ID": [
         "BPM-2023-03-13-46a32bf6-1c89-402e-b214-eb40a30dd45b"          "BPM-2023-03-13-46a32bf6-1c89-402e-b214-eb40a30dd45b" 
     ],      ], 
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     "exp_data_date":     "exp_data_date":
         "2023-03-07 08:19:00"          "2023-03-07 08:19:00" 
-    ], +    ], 
 +    // Parent synthesis ID.  This is the synthesis/experimental ID of the immediate 
 +    // parent experiment from which the current material was derived.  It is an 
 +    // optional field and should be used in cases where the material of interest 
 +    // was derived, isolated, extracted, separated, fractionated, etc, from 
 +    // another sample. 
 +    "parent_ID": "BPM-2023-05-04-0fc3e959-27bd-451b-b7e2-fa1481b188ea",  
 +    // A brief synopsis of the experiment
     "synopsis":     "synopsis":
         "The fifth test of the group",          "The fifth test of the group", 
         "Testing the fifth thing."          "Testing the fifth thing." 
     ],      ], 
 +    // Synthesis 'platform' where the sample was produced.
 +    // This can be any of the automated capabilities at 
 +    // BioPACIFIC, your PI's lab, a different PI's lab, etc.
     "platform":     "platform":
         "LBF"          "LBF" 
Line 89: Line 111:
         "all"          "all" 
     ],      ], 
 +    // An optional field, captures files that further
 +    // describe the given data.
     "context_files": []      "context_files": [] 
 } }
 </file> </file>
lims-guide-metadata.1680885400.txt.gz · Last modified: 2023/04/07 16:36 by csdunham