NSF BioPACIFIC MIP Wiki

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==== What is metadata? ====
Metadata is the data that describes your data.
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For the LIMS, metadata comes in the form of JSON (JavaScript Object Notation) files.  These files are collections of key: value pairs that contain the information required in order to incorporate a piece of data into the LIMS system.  
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Each metadata file captures inputs (from the researcher) about the component(s), polymer(s), and/or composite in the sample; the instrument used in characterization; the type of data captured (i.e. data category); veracity of data (does it describe a sample whose identity & composition is confirmed?); and other parameters.
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An example metadata file is shown below:
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<file javascript metadata.json>
{
    // acquired_by is the LIMS username of the user
    "acquired_by": "bpm_admin",
    "components": [
        "valine",
        "isoleucine"
    ],
    "component_classes": [
        "Monomer",
        "Monomer"
    ],
    "polymers": [
        "poly-VI"
    ],
    "polymer_props": { 
        "polymer_components": [ 
            "valine", 
            "isoleucine" 
        ], 
        // Component ratios come in the form of a string,
        // where each component is separated by a colon.
        "ratios": [ 
            "50:50" 
        ], 
        // Ratio types can be MassRatio or MoleRatio.
        "ratio_types": [ 
            "MoleRatio" 
        ], 
        "formulae": [ 
            "(C11H24N2O4)n" 
        ], 
        // All molecular weights are expressed as g/mol.
        "molec_weights": [ 
            250.0 
        ], 
        // Tg: glass-phase transition temperature, in C
        "tgs": [], 
        // PDI: polydispersity index
        "pdis": [], 
        // SMILES string, preferably isomeric SMILES
        "SMILES": [], 
        // bigSMILES string, refer to bigSMILES publications @ MIT.
        "bigSMILES": [] 
    }, 
    "polymer_mechs": [ 
        "StepGrowth" 
    ], 
    "composite": [], 
    "composite_props": { 
        "ratio": [], 
        "ratio_type": [ 
            "MoleRatio" 
        ], 
        "pdi": [] 
    }, 
    // Note: synthesis ID and experimental ID are used 
    // interchangeably in conversation. However, the
    // system expects a parameter named synthesis_ID.
    "synthesis_ID": [
        "BPM-2023-03-13-46a32bf6-1c89-402e-b214-eb40a30dd45b" 
    ], 
    "synthesis_date": [ 
        "2023-03-08 21:12:00" 
    ], 
    "exp_data_date": [ 
        "2023-03-07 08:19:00" 
    ],
    // Parent synthesis ID.  This is the synthesis/experimental ID of the immediate
    // parent experiment from which the current material was derived.  It is an
    // optional field and should be used in cases where the material of interest
    // was derived, isolated, extracted, separated, fractionated, etc, from
    // another sample.
    "parent_ID": "BPM-2023-05-04-0fc3e959-27bd-451b-b7e2-fa1481b188ea", 
    // A brief synopsis of the experiment
    "synopsis": [ 
        "The fifth test of the group", 
        "Testing the fifth thing." 
    ], 
    // Synthesis 'platform' where the sample was produced.
    // This can be any of the automated capabilities at 
    // BioPACIFIC, your PI's lab, a different PI's lab, etc.
    "platform": [ 
        "LBF" 
    ], 
    "instrument": [ 
        "ht_rheo_zeiss_axio_obs_7" 
    ], 
    "data_files": [ 
        "SRI-PEC_v2_mth_20220912_223358_0GLE9.asc" 
    ], 
    "data_category": [ 
        "msd" 
    ], 
    "is_verified": [ 
        "unverified" 
    ], 
    "data_availability": [ 
        "all" 
    ], 
    // An optional field, captures files that further
    // describe the given data.
    "context_files": [] 
}
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